Scaffold Ga0070713_100515931

Overview

Basic Information

• Taxon OID: 3300005436
• Scaffold ID: Ga0070713_100515931
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008790	Metagenome / Metatranscriptome	328	Y
F018651	Metagenome / Metatranscriptome	234	Y
F067623	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070713_1005159311	F018651	N/A	EFRQIMRDAEIANAIFPVVRQHRFTQAATEEALRELAVPRAANIARICVSLGL*
Ga0070713_1005159312	F008790	GAGG	MITPILRRKDAIATWLIDVAGNVAISISDLALLKRIRSLIIPAFVSTEEAMLWGSDLNPEQRATLLDMQRSVSNAARAEADPQRMVNLATQSQLLREAAEAAPFEGQR*
Ga0070713_1005159313	F067623	N/A	LKDLIKSEMEAAARQRSEIYFKRHKASRRRAVLFRQLRASTTNQICDLKQPTLGNTYVTQELFSGQRLLKGFAP*