Basic Information | |
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Taxon OID | 3300005436 Open in IMG/M |
Scaffold ID | Ga0070713_100160659 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2005 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F004122 | Metagenome / Metatranscriptome | 452 | Y |
F006481 | Metagenome / Metatranscriptome | 372 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070713_1001606592 | F004122 | N/A | MTEKGLSDSGRRSAELRHEWQSFLGLLPVLDLRPMDPVLYQRCLTAVWLSRNSAIGRTDLQQAAGLTFQTETVAFDLLLAQLVREDILEPIISSPFHFQIQRRNWTHPESAYAADDRRSLSAIVRKEQAARFRMLGLLDARILNPRLPEKRVQQVREERDELGQIYEATWLELENAIGSQSAEAIRKSVEETREVGVVQLELPLEQKRTFDLEGEAICNQ* |
Ga0070713_1001606593 | F006481 | AGG | VVDTIIAAPASSEAQLPSRVLEIRPEESKVVCVGADGREFVLSRLVGSNVRIGDEVFAPASTGTATADTEVYIRKPSLRRADVYQVTAGYAALPKLDKREEPFVRVQAEGQLGINTIHIPCPVIRDYFFAANRRAPWPSQPTFYYVLRLPQDVTYKELRLAYRLRRMELEKQNASNAELATIERAYNMLADPDIRGVYDTLIKDSAIPVPFPYSGFGSLLVQGERSSESGVFFANRILAFMPDRRCRTVPVPLRKLDYFEDYAILRDRHRKLEVLIDHQ |
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