Scaffold Ga0070713_100024624

Overview

Basic Information

• Taxon OID: 3300005436
• Scaffold ID: Ga0070713_100024624
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4691
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000427	Metagenome / Metatranscriptome	1151	Y
F002177	Metagenome / Metatranscriptome	587	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070713_1000246241	F002177	N/A	VPGRLTLIHIGRLKSLPAQPIQKAPISEKTKELFQRDTKMMQTAELATQLPTYGRPINFTPERVQQIRNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLQRVVFDNGVRLLRRDGSHNGTSTYTASRLGGVPLPPISRHPQQLSQSGPVEQPEATTSHEERARADDMGLATFGLTMKYRGHERTTELPLTQHMIMQLVFEAQFRNMRIGALVGELLLVIMKRDIFQHVLEPNSKQP*
Ga0070713_1000246246	F000427	N/A	MPRPKNGIRVLWLNRRVLGSSDDLSSAAMTTAYDVSSPPRGRRVKFTPEVIESIKKLVAQGINRHEIANRLGVTVGSLQVTCSRLGISLRRIILSNGSHHTLDVRGRTSPAPCSVGVAHVREQREVSQPGTRAAPVVQFAITMRCHGKEKTFEVPLPSPAIAVLALEATSRNLNIVDLMGQVLVAAINKDMIHNILR*