Scaffold Ga0070713

Basic Information
Taxon OID	3300005436 Open in IMG/M
Scaffold ID	Ga0070713_100011465 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070713_100011465 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6457
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6457

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.4774

Long. (^o)

-85.451

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018247	Metagenome / Metatranscriptome	236	Y
F071523	Metagenome / Metatranscriptome	122	Y
F087522	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070713_1000114651	F018247	N/A	SPSGSLPEDKAAAIPPEGPSLAELAKQTRQAPHGKAQATLDNAEGSSAPAGFKTFTLQYCQNQQLCSEATVVIPENAEVVSRTNGQHIFKTALDGEQLMLYAGPADANAPYRSLTDPDYIRVRDLANSNHWSSEQAGSVSTQDLTILGMPALMTRFRYKRDQQRWWIGERVLIENRGAQFLLGCAAPEERFADAEVVCTTLVNSLKLQ*
Ga0070713_1000114653	F087522	GAGG	VRKLLQEKRRFLSLFTTALVLLWMAGPAEPLVRAQSSGTPKTRRLLLHATVKPGEVLRYELEAAGAFLPIADASGAILSPARGPCDYALAAIVTLRPQAPDKDGNIPVQAQYSQTRVSSARCALFSAPDFEKRLVALESSPVVFRVGPHGETALNRAKDGYFKYWDGGDLLRKATEDLLQTEFAPHPVSAGESWKPRGQFAYARDRALKDLELSGSDLRFRNLVQVDGRSCAWVTSQYIFSPIDLPAAGTASGGRTVPAAGNNAVAAVLHISLLLDPVTQHVAWLHRSETIDNKLTLASPYDDSDPTEDAAGPDDPPDGENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDEHSTEWLSALKRFESTPEPESGSIPFPITRSLLPNQITLASKPATVNRSTHKILDSDSLLTTPAGFTRYEKGLCRDVWFCASVSVALPGEVEVSEDTPLRTVFLAGTRESRLSIAVGPALDRRPSGLREDEELKKQAQYYLENFIWLAAKPGIGANFSDATLDGYPSLVVDFSATQRNIADIHGVLGIMLTPWGKVVPVSCSAEHSWTAQLQSECEKVITSVSLRR*
Ga0070713_1000114657	F071523	N/A	AVVTALLVGMVTLLLIESMRQWLGVLSGRRQALLKEAPFVMTHLAEERV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070713_100011465

Overview

Ecosystem & Geography

Associated Families

Sequences