Scaffold Ga0070714_100075600

Overview

Basic Information

• Taxon OID: 3300005435
• Scaffold ID: Ga0070714_100075600
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002094	Metagenome / Metatranscriptome	594	Y
F008277	Metagenome / Metatranscriptome	336	Y
F094204	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070714_1000756003	F094204	AGG	MAASLLLPLYQTTISLDGVNMGYVWYDSYKAVIVETDWTKMQDRIQSAKSKINDRKRVLSEDHGGTPEERQAIANALNAMGTLRTEVADWQSRQVPRVTDEKTDEKTTSEIALGPELRD*
Ga0070714_1000756004	F008277	AGG	MNDIREPAEAKRQVVQCAILELLELAQQEGITPGDFIQLLDSGMRISDFIAAITPLANANKSIDCDS*
Ga0070714_1000756008	F002094	N/A	GQELTPGDRVEGLGTFGRPTGEIGTVERANEEDAVVKWDDDGRTRLHQPSLKKI*