NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066845_10009464

Scaffold Ga0066845_10009464


Overview

Basic Information
Taxon OID3300005432 Open in IMG/M
Scaffold IDGa0066845_10009464 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3312
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y
F066695Metagenome / Metatranscriptome126Y
F084085Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0066845_1000946410F084085GAGMMCKDVMMTLLSLIEKEMKRRIEHSYFEEESDKWSKFHDYIREIRLTIKKGGIK*
Ga0066845_100094643F024093N/AMAVIKQMDIVAKEISKDIIKEIYKQCDWQVGQFLPKDAESPIINDTHSYLMRLVGRHIANKLDVTTNKYYDE*
Ga0066845_100094647F066695AGAAGMELLTDDIIIEALESDGIMQEPDANWLIEYIESEYGGNLDNTTDWCDKQHILKIYSESTCDSYDIYWCTHDERPYVSQDGYYYEDYQEWSERAISEMTSGGAVWVEPHLWNDMEYDFNHELEQWWTDVYEDLFNDKKDELMDSGDYYEDKEEK*
Ga0066845_100094649F031892N/AMTSIEFNALVHELDSHAIQTMNKKGPEYTTGNEDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFNERDNL*
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Institute for Fundamental Biomedical Research
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