Basic Information | |
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Taxon OID | 3300005432 Open in IMG/M |
Scaffold ID | Ga0066845_10009464 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3312 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024093 | Metagenome / Metatranscriptome | 207 | Y |
F031892 | Metagenome / Metatranscriptome | 181 | Y |
F066695 | Metagenome / Metatranscriptome | 126 | Y |
F084085 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0066845_1000946410 | F084085 | GAG | MMCKDVMMTLLSLIEKEMKRRIEHSYFEEESDKWSKFHDYIREIRLTIKKGGIK* |
Ga0066845_100094643 | F024093 | N/A | MAVIKQMDIVAKEISKDIIKEIYKQCDWQVGQFLPKDAESPIINDTHSYLMRLVGRHIANKLDVTTNKYYDE* |
Ga0066845_100094647 | F066695 | AGAAG | MELLTDDIIIEALESDGIMQEPDANWLIEYIESEYGGNLDNTTDWCDKQHILKIYSESTCDSYDIYWCTHDERPYVSQDGYYYEDYQEWSERAISEMTSGGAVWVEPHLWNDMEYDFNHELEQWWTDVYEDLFNDKKDELMDSGDYYEDKEEK* |
Ga0066845_100094649 | F031892 | N/A | MTSIEFNALVHELDSHAIQTMNKKGPEYTTGNEDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFNERDNL* |
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