NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066845_10002900

Scaffold Ga0066845_10002900


Overview

Basic Information
Taxon OID3300005432 Open in IMG/M
Scaffold IDGa0066845_10002900 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5620
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000896Metagenome / Metatranscriptome845Y
F004368Metagenome / Metatranscriptome441Y
F004819Metagenome / Metatranscriptome422Y
F060981Metagenome132Y
F063755Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066845_1000290011F004819GGAGGMQYYPKDQDPRLDERSARFHARVLKEDLATLPYVPNTQNRDINIARASTYVTWDYDKDMWAEVDHLLMNFYINAKTTDTREYLEDKINRDVVELLKGPRYYESAKVYCTIDMHYPEDESIYDIVKVPSKDRKTGWGISGKEGDITYHVTLHVQECNAMDLVVYDNEGRGDFFNLNGDNLETKEKEMA*
Ga0066845_1000290014F004368GGAGGMGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCIQVEVASIFQDKEEGDYSTLTYILEGGFKGFHNMEPSDLIREYKGIEELWYELESCDGLYWEPYEEDPIHALNKEKV*
Ga0066845_1000290017F063755GGAMIIYGHSGQDIRRAIWRRRYKFILAFAVIVIAVMLTGCGTAEKKFELKALDQFWETLGSGKNSTGVE*
Ga0066845_100029003F000896GGAMTNKINLVINLSILALLIYLAVAVKQIQDKVFPDPDIMIPLAGMQMDSKTELEYNIRTFLNNALTQAIEDQER*
Ga0066845_100029005F060981GGAGGMVETMTADTKLRIADLERQKIELNSRIERLSYSGNHARMLELEQEVWEIEDTIKKLMP*

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