Scaffold Ga0066845_10002900

Overview

Basic Information

• Taxon OID: 3300005432
• Scaffold ID: Ga0066845_10002900
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5620
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F004368	Metagenome / Metatranscriptome	441	Y
F004819	Metagenome / Metatranscriptome	422	Y
F060981	Metagenome	132	Y
F063755	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066845_1000290011	F004819	GGAGG	MQYYPKDQDPRLDERSARFHARVLKEDLATLPYVPNTQNRDINIARASTYVTWDYDKDMWAEVDHLLMNFYINAKTTDTREYLEDKINRDVVELLKGPRYYESAKVYCTIDMHYPEDESIYDIVKVPSKDRKTGWGISGKEGDITYHVTLHVQECNAMDLVVYDNEGRGDFFNLNGDNLETKEKEMA*
Ga0066845_1000290014	F004368	GGAGG	MGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCIQVEVASIFQDKEEGDYSTLTYILEGGFKGFHNMEPSDLIREYKGIEELWYELESCDGLYWEPYEEDPIHALNKEKV*
Ga0066845_1000290017	F063755	GGA	MIIYGHSGQDIRRAIWRRRYKFILAFAVIVIAVMLTGCGTAEKKFELKALDQFWETLGSGKNSTGVE*
Ga0066845_100029003	F000896	GGA	MTNKINLVINLSILALLIYLAVAVKQIQDKVFPDPDIMIPLAGMQMDSKTELEYNIRTFLNNALTQAIEDQER*
Ga0066845_100029005	F060981	GGAGG	MVETMTADTKLRIADLERQKIELNSRIERLSYSGNHARMLELEQEVWEIEDTIKKLMP*