Scaffold Ga0066854_10211388

Overview

Basic Information

• Taxon OID: 3300005431
• Scaffold ID: Ga0066854_10211388
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F061917	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066854_102113881	F061917	AGGAG	MTNEVTTTKQTSVNNVDISTIINEVIEYTKDKNAVGDIQDMIASVPKSDSLDWKLVSGVLCNSIVEWVANNK
Ga0066854_102113882	F000782	GAGG	MTKTEFKNSVNGIFSVRWLKNDGTEGYVHRGILGLTKHIDGEHNEHNDYVLVYKVGNGYDDVRRWANVNPNTITHINNNQVL*