Basic Information | |
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Taxon OID | 3300005431 Open in IMG/M |
Scaffold ID | Ga0066854_10012764 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2782 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013700 | Metagenome | 269 | Y |
F040683 | Metagenome | 161 | Y |
F058216 | Metagenome | 135 | Y |
F096041 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066854_100127643 | F040683 | GGAG | MKKYRVWGYETQGYYIDLEANNKQDAHDKAMDVDRDDWIEGNDGESTCFDINKKDMEVIK |
Ga0066854_100127646 | F013700 | AGG | MNIDYKNLTYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYYEPPETNEEDDEV* |
Ga0066854_100127647 | F096041 | AGGAGG | MNKNKEYIYITRTMKINVPALLCQDAIDKVLTMKKNDLIPKEKGFLYTRCRVRKGRDEYRL* |
Ga0066854_100127649 | F058216 | AGGAG | MNKTIAQLVKDKHWSVQGLAKSINITKEDIQTWEKSNKPYKKSKKKSYLW* |
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