Scaffold Ga0066846_10026390

Overview

Basic Information

• Taxon OID: 3300005429
• Scaffold ID: Ga0066846_10026390
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2146
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062152	Metagenome / Metatranscriptome	131	Y
F099435	Metagenome	103	N
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066846_100263901	F099435	AGGAG	MLMIKTETLKEIEKCEPKRQTTLMYVVKNCSSYKVSHTTENEHWLCGSVIVTHWNHDTGYSRKYMGLAYPDNFESWSFHNDELAGEAFKTHHEMENA*
Ga0066846_100263903	F062152	N/A	MKLGNNLNFKEDFKMGPHYMNELIKHINKLNEETRKSGAVGFLTNDPDHWASYGVYTIGDFQLYLEREHERNMFKNNF*
Ga0066846_100263905	F105352	GGAGG	MSYCRKTRKSKENNSYKLEIPRPQFDRIADAFEHQVIDVNGYDVEKDTVIFTVSEKQRLWFEKIAKSKNIKWKGKVKPNPYYWITKMFLLRNIEQYRVK*