Scaffold Ga0066851_10047712

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10047712
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1465
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F062179	Metagenome	131	Y
F082543	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_100477122	F062179	AGGAGG	MPDLRIKTAIDNGDLPKDHGHSFKDITLEQATNPTVIKAYYEQFKKEFGRPSIFASPIKKGSRSQS*
Ga0066851_100477123	F008252	AGGA	MSKTIVNPNPFGRSGKNNGLWFFYDADISIYWNRSHTFNVWDNGKEVNCFTVMESMTPKQAEENADEWLADVLEEEKLRHADAF*
Ga0066851_100477124	F082543	AGAAGG	MTNLYKPFEDKFNEFGFEYDRAEDLYKAMRTIHRLVGSRDNSNLMKLSNDLPLGSALIDVAEEFGKLDGRGTSYKFRF*