Basic Information | |
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Taxon OID | 3300005427 Open in IMG/M |
Scaffold ID | Ga0066851_10044439 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1529 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013818 | Metagenome / Metatranscriptome | 268 | Y |
F025847 | Metagenome | 200 | Y |
F057671 | Metagenome / Metatranscriptome | 136 | Y |
F093707 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066851_100444392 | F057671 | N/A | MSVTKELDRIAFDVHNQVFEYMYETVAKELEYSDLEDINDNELHEYVMNQVINRFIQK* |
Ga0066851_100444393 | F093707 | N/A | MSYKNTLRYIRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE* |
Ga0066851_100444395 | F025847 | GAGG | MDKRINRLFNNFGIAILFFLLGTYFTYYKIDQRLWNENINKAWDIEARALNFPKKSCYNWQDLEIIIFGEIQE* |
Ga0066851_100444396 | F013818 | GGAG | MNSVKKYHEMKQDKIDKESLYLCCEIEKALERIISYDDGMLNDTMFTKIKKPAIKLLREWHL* |
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