Scaffold Ga0066851_10044439

Overview

Basic Information

• Taxon OID: 3300005427
• Scaffold ID: Ga0066851_10044439
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1529
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F025847	Metagenome	200	Y
F057671	Metagenome / Metatranscriptome	136	Y
F093707	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066851_100444392	F057671	N/A	MSVTKELDRIAFDVHNQVFEYMYETVAKELEYSDLEDINDNELHEYVMNQVINRFIQK*
Ga0066851_100444393	F093707	N/A	MSYKNTLRYIRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0066851_100444395	F025847	GAGG	MDKRINRLFNNFGIAILFFLLGTYFTYYKIDQRLWNENINKAWDIEARALNFPKKSCYNWQDLEIIIFGEIQE*
Ga0066851_100444396	F013818	GGAG	MNSVKKYHEMKQDKIDKESLYLCCEIEKALERIISYDDGMLNDTMFTKIKKPAIKLLREWHL*