Scaffold Ga0066829_10012244

Overview

Basic Information

• Taxon OID: 3300005422
• Scaffold ID: Ga0066829_10012244
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2793
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088728	Metagenome	109	N
F099130	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066829_100122443	F099130	N/A	MKREYKDIYIVHDAEGDVQRITERHQDIAKYVVAVTAYGQAGKMRRVASSLNEMVRKRGEEAIFKVVRSDGKHMVVRKLIPDDKLEFIDHTLLDWEDIE*
Ga0066829_100122445	F088728	GGAG	MRKLVLLFIITISFFVASFCFADDNKSPIFQGKTDTECIKETGVDLRWVESFKTDNYVHYVNRPVENALVCHKKEMLLFVIKGFEEIYVICGQEYSDKTQNWQLFEVDIYNNEDAFTKRYREMLCELATMIPESEKKCIIKND*