NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068883_1653481

Scaffold Ga0068883_1653481


Overview

Basic Information
Taxon OID3300005419 Open in IMG/M
Scaffold IDGa0068883_1653481 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091306Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0068883_16534811F091306N/ASLFKSLILLRMMKVILTLWALYLLNLTNAPEVLKTISLVRRIGTINVAKSTRLTPIAMTISTGKNDDPLEKWLTDSLEKLKTVLSIPGILGSEEHLSNYASQSAGIESSLNDSIKYVQTISKYRGPGIPVPETVICAGQIADNIKGYVFQTKETLTNSYGTLNLQWSKTDILPGTAAYSTLINFYNDVRSSVQDLESNLGTHLQMLESLTSGQVTPHLTAKIQELSCVPAAEFDKIQLDNCIKVDTGLYCTFYISTFTATTIYKRYVPVNYRGVVVKIPPQNIVVKSSETDEQGLLHCERAPTAAINSCSFQIWDPIKHIFERDPLLAIQNCNFTFAEIPLPLQTYDYSVFIMDPQLEIAINPSQGAPPIQIDNMSPMIVSLFKDSFLSLDKDRLHLSFKGALQTDTFRIQVSIFNESLLNLMYEKAMKQTFGEINWDTVFKYGMAILQMVVAPTAVFTCGISFYAIMRSICRRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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