Scaffold Ga0068883_1510218

Overview

Basic Information

• Taxon OID: 3300005419
• Scaffold ID: Ga0068883_1510218
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 618
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009683	Metagenome / Metatranscriptome	314	Y
F014016	Metagenome / Metatranscriptome	266	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068883_15102181	F009683	AGTAGG	LEFHLSAFISGVFGTHLKPKPLMKVIREEGQVSDSQRSLSDWLEDAGNTLLDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLALIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFS
Ga0068883_15102182	F014016	N/A	MINKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKQQLRGRLSKAEISAYWLDKYGVDADVA*