Scaffold Ga0068880

Basic Information
Taxon OID	3300005416 Open in IMG/M
Scaffold ID	Ga0068880_1422077 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0068880_1422077 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaT (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2597
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2597

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F032529	Metagenome / Metatranscriptome	179	N
F061798	Metagenome / Metatranscriptome	131	N
F075668	Metagenome / Metatranscriptome	118	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068880_14220773	F075668	N/A	MSNEYSVNDIRCLVMYALNKVNTQKDFCENFRVFSGLYVAIMAFKIYEPNKQFELEKGPLLYEQNHSSFYNSKGSKSRRKINRSNQFYE*
Ga0068880_14220774	F104447	AGGA	MTSTKTGYLCTTIHQLRLKNEFGDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWKLTACAKYSWK*
Ga0068880_14220775	F029090	N/A	MKQKSKVVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLTIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQANHFRLIYETINSIDLKEGYTKNFKWFRKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN*
Ga0068880_14220776	F032529	N/A	MAESRRLIDVTDAERARMKTILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKENTSSKEISLEDTSCEVTSSTDTTSENEAKK*
Ga0068880_14220777	F061798	N/A	MAEGRFIDLKSQDIKQIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIVRRCEAWCEAIVFQPIPLDLSQKDNGSENGNPSEGKTNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068880_1422077

Overview

Ecosystem & Geography

Associated Families

Sequences