Scaffold Ga0066848_10006171

Overview

Basic Information

• Taxon OID: 3300005408
• Scaffold ID: Ga0066848_10006171
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3711
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039346	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066848_100061714	F039346	AGGA	MFASFTITLIECLEIAFITLLILQTKVNKPTVITYGSLGLVGGLLSAYYLHDILENYEWLMYAILSSLFLYLFIKNKDIQKHIKAHVDDITQSSSTVLFLTAFFIYGRESFEIFSNLFLNPDASWSAAFLAATVAVGIYIFARDSKIKSYIFQFGYWAYLAFALWFGYEALEHLHIL*