Scaffold Ga0066856_10000709

Overview

Basic Information

• Taxon OID: 3300005404
• Scaffold ID: Ga0066856_10000709
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12538
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066856_1000070914	F106168	GAGG	MKLKTQMKNFYKRNKMLSIGITALGAWYVLNRQGMAPSLPSAPVKSATSSAPVARYAYDAYPPVRNEPYTNSSHFFGPADGDPVFYGF*
Ga0066856_1000070916	F083393	GGAG	MKIVDKIFKTADKHPLLTFAAGSLGIMYLFETYGSINGLGQATFKTSGTEMDDMFRKTGHTGAPAPGTGRWDTVMPSPQGPQVRYDADYHTQPIMMDPMLEQTLMERGKRPVVQSASIRHGYEPQVFAGMRHNL*
Ga0066856_100007094	F086698	AGAAGG	VAGAGDSEKVQMHGTTGSGNVLPISAITQETSTSMLFTRQGREDFASATHPRMQVPSHTVAKQLPLLCGLNDVVAQTGFLLTADSSNTVTVMIGGSSVSSTDGIPLVAGQSIMIDIVRLSKIYAIASTDPSGGTCNLFWLDM*
Ga0066856_100007096	F075433	AGGAG	MSDEIVMAKVNAFANELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFDSIDNDTGEISHGGREDYGE*