Scaffold Ga0066855_10084850

Overview

Basic Information

• Taxon OID: 3300005402
• Scaffold ID: Ga0066855_10084850
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 986
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031657	Metagenome / Metatranscriptome	182	Y
F044590	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066855_100848502	F044590	N/A	MIIKINDRVEIRPVGGGMLRDGIITNISISTNKELDPAGERGPSVEELDLDLEFPGSIGYTDVTFNDEGDESGDSRWAYFGQIKTK*
Ga0066855_100848503	F031657	GGA	MTKKKKLHFLYLIKDVGFKMLTESDAKKYKKDNGDVIWNVHKSINIKPDLLEEK*