Scaffold Ga0066867_10148115

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10148115
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 875
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032335	Metagenome	180	Y
F039585	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_101481151	F039585	GGAG	LLCLASVLCVRMSSLQAEEDLLRAHDEKCMEYFTEIVEIQKFREMLTIGAELLIKRYERGNLTKKELDSTLVVWHNAESRLRQKVTKIYDVAYSEKCFENESKRTERRDAP*
Ga0066867_101481152	F032335	GGAG	MKVSELKEGMLLRFKKPRVYKYLRDSGDDFWLDCGALDPRMTLKWVQTGQPLMIYLGQEEMEAPSHYGGYMNIRKVSVEGREAWMWPDAWRYVEAV*