Scaffold Ga0066867_10064408

Overview

Basic Information

• Taxon OID: 3300005400
• Scaffold ID: Ga0066867_10064408
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1417
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F073414	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100644082	F011190	GGAG	MIVNSIKGFINGLKKSFSGKDYLREINQCDKCGKPSFFGSCLKCETDEAYRGWNKTNKL*
Ga0066867_100644083	F073414	N/A	MPCDCENNKKEQDECPGGQTFDVSKGECVAKESAFGDPKTTDAQADVASSGADVGGSQEVEGTQCPEGHSLNADSGVCEPNGSDKTGDIGQTNTSIATENSKRLNAIEQSIKALAEKKPSAQVGLEDGHKTWSQVAEQMAPSLRKFGKFEFDISLESLRSINTKQTRDRTGAVTESFRDSPLQLKEAVSISGTHATQDLDTDVAIVPGGISFKPVFQFAKTKRIEAGMDRARFFKTSIPANGSQTVGTTPSEATQTFTSIEVTPSTITGVYLV