Scaffold Ga0066867_10003409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066867_10003409

Scaffold Ga0066867_10003409

Overview

Basic Information
Taxon OID	3300005400 Open in IMG/M
Scaffold ID	Ga0066867_10003409 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7506
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F083376	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066867_100034094	F019751	N/A	MTRTRGPDLSKEFKSYIFNQWMFFGKNAYQITETINKDTKLMSQFGKTTPAGVHYHIKNIEKDLEDTISEDAMDTYIGEFIRARTGFENDVADVEDLMKHEKEKGLDDMDKDLYLKLSRFRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPPKPTAEIITKVEEDGERISE*
Ga0066867_100034099	F083376	AGGAG	MIKIFTDRDTKTVVESLDLGRVSLGETFKYTMFIKNTDTEWPVHNIKIENVNPELRFEIPEMLKANEVKEVHVYWTPKLDSRKPLKSEFKFSGDVYIG*

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