Scaffold Ga0070667_100519617

Overview

Basic Information

• Taxon OID: 3300005367
• Scaffold ID: Ga0070667_100519617
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020547	Metagenome / Metatranscriptome	223	Y
F028243	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070667_1005196172	F028243	GGA	MASGATLTHCFVLIDKWPALLRVTLEAGFVSAQESKAAASELLLNICRGALGRDPFVWFMAIAAAHLALEHRMMMRQLERRANVQVTLETRVRRFSRVDDRAGFAAGLDVQTPGAVAGLATHVDGLLCLFAAAFCSALSYD*
Ga0070667_1005196173	F020547	GGAG	MWFFMAAGGPTRALLQEIRVVDVSNENVSLYFLLLEMAFYAERRVAFIQQALVNGSVR*