NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070675_101542339

Scaffold Ga0070675_101542339


Overview

Basic Information
Taxon OID3300005354 Open in IMG/M
Scaffold IDGa0070675_101542339 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031564Metagenome / Metatranscriptome182Y
F065761Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0070675_1015423391F031564N/AVLLRAKGEILGTVEAPDVASAKAAAAIQFGLDDVQRDRIMVQEL
Ga0070675_1015423392F065761N/AIERLLAKVEAEVARRGLRARRYTFHPDEVAEAEAQGLPYALVPRVLSKQEWLERYATPGAEAEFYARLRGGPVAFTRPGQPVAPAAPKPSENLQ*

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