Scaffold Ga0070668_100881815

Overview

Basic Information

• Taxon OID: 3300005347
• Scaffold ID: Ga0070668_100881815
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029574	Metagenome / Metatranscriptome	188	Y
F096853	Metagenome	104	Y
F101050	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070668_1008818151	F029574	N/A	MLKGIEKMERSARYIVRLQKNGQYLVVMSRPEWANREIPGFATEKEANAWIASRRLQSKL
Ga0070668_1008818152	F101050	GGAG	MSRGNREKKKPKADKNKAKPAAAITPFGAASNAGKAVGKSK*
Ga0070668_1008818153	F096853	N/A	VIGGTLRPAKVIAIVDGGRIGWLEFLDIKGPPFELTGANISAWKLVRHDR*