Basic Information | |
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Taxon OID | 3300005346 Open in IMG/M |
Scaffold ID | Ga0074242_10948978 Open in IMG/M |
Source Dataset Name | Saline sediment microbial community from Etoliko Lagoon, Greece |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1230 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Etoliko Lagoon, Greece | |||||||
Coordinates | Lat. (o) | 38.482158 | Long. (o) | 21.313175 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001018 | Metagenome / Metatranscriptome | 804 | Y |
F053230 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074242_109489782 | F001018 | N/A | MTQITHTKLKELNVIQLYEHYGALERSFPLLTPESQELAKAELEACVALRSEKIDRIYYVMASHEDAIDRIKKEKLLILKAQKHHETQVTGLKKLLSYLRRVLPADSNKITGRNYQFTLSRKKELTVEIKSDPEFWSADERTNFCIQEEVTTTKKTVVRSMSGEILDTKIVPSTKTTVLPNLDAIRNAYQNNQQLPHGVKVLQEYSIRSKRIYGEPRLDLETSEYPGELLPEAGAADES* |
Ga0074242_109489783 | F053230 | N/A | MFESILSTVLPIVQDILWTACAALLAYVLNKVQSNIQNI* |
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