Scaffold Ga0070689_100011974

Overview

Basic Information

• Taxon OID: 3300005340
• Scaffold ID: Ga0070689_100011974
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6232
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056700	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070689_1000119746	F056700	AGGCGG	MFGFLTPPTKDDADALVSARSVSAWLRHLPTQDVIARQHQVMRIFDGMRQSARPVDHNRIAAIQFLDTALGADRRQLVKQYVENIDRSARVADRGWQAAQEMSQGFVYAYQTALEAALAETSNQRWKPFIPQLFARLLHYHGTDAKLRAFRHERWIPAKWTNLHQLYARAIELGIVRVQVALPSAGPGAMQWSTDQEYVYALMIQQLNMGSLSPAEIDWASAQVRAWGRKLEFEAVPKSSEGFYVDLASKRGLVRRTGNESGPTLHFLDTTPLADQLERALHAIRQTDIGEPGAAAAVNMQRIAVLEKVRPVVAPNLHGDLRRAPRLPVTVAAKVRVGLARICHELTPKEMVESANDADAGNEQIEVFAVADSPRARRHHLPDEHDSLAASIVPVGDQAWQVKDRSVAGLRISASGGIGQSLVLGALVAIRQTDSAEWVLGAVRRLNKVSNDEVEAGVSIIADRVVPITVNARRAAKEDLGMVVNGVDVSMMGSRFDALYLPPPSRPEKPLTVKTVIVPTSEYADGRNLILTTGKSIYTIALRHLVEQRADWSWAAFQIIDKKPTDY*