Scaffold Ga0070660_100000073

Overview

Basic Information

• Taxon OID: 3300005339
• Scaffold ID: Ga0070660_100000073
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60206
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (73.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059118	Metagenome	134	N
F080973	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070660_10000007333	F059118	GGAG	MFLIALMGGLLANPPVHDPLVPPMRVTTSFACHGIQRSITVARGIGRDAVVAVTADGKPLVGTAMSAIRTGLAPLTAIDDVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGAGGQAAVRDVG*
Ga0070660_1000000735	F080973	GGAGG	MALPTQGDVRELIAGAICQLTGIPTCEIDLGPSRVLIHSDTRCGYNWSYPDAMVKARFRPFVHRAVSMVRDQYPILR*