Basic Information | |
---|---|
Taxon OID | 3300005338 Open in IMG/M |
Scaffold ID | Ga0068868_100534741 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1031 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025070 | Metagenome / Metatranscriptome | 203 | Y |
F037818 | Metagenome / Metatranscriptome | 167 | N |
F041870 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068868_1005347411 | F041870 | N/A | SADEEAIESNLTQAQEAQKMPRTDINEEEFLACARYGLMLAEQNEDDAIRANLLKLVRAWLAAANELEKAASKVLAEISARP* |
Ga0068868_1005347412 | F025070 | GAG | MNYEGIEFSVRAGLGRNEWVVTIHFPDASEPLARSSVVKVTGTRNEAIALTRDRILNWRKRQKLKARATT* |
Ga0068868_1005347413 | F037818 | GGGGG | MGDELGTEFSAACNKLRRVLQEKTGDGRMRDLEAWLDYDGKSVFIAALWSDDEASVAVRFQLSVPISAAEFDPQMFIRAAEGSERATSRLAA* |
⦗Top⦘ |