Scaffold Ga0068868_100534741

Overview

Basic Information

• Taxon OID: 3300005338
• Scaffold ID: Ga0068868_100534741
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1031
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025070	Metagenome / Metatranscriptome	203	Y
F037818	Metagenome / Metatranscriptome	167	N
F041870	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068868_1005347411	F041870	N/A	SADEEAIESNLTQAQEAQKMPRTDINEEEFLACARYGLMLAEQNEDDAIRANLLKLVRAWLAAANELEKAASKVLAEISARP*
Ga0068868_1005347412	F025070	GAG	MNYEGIEFSVRAGLGRNEWVVTIHFPDASEPLARSSVVKVTGTRNEAIALTRDRILNWRKRQKLKARATT*
Ga0068868_1005347413	F037818	GGGGG	MGDELGTEFSAACNKLRRVLQEKTGDGRMRDLEAWLDYDGKSVFIAALWSDDEASVAVRFQLSVPISAAEFDPQMFIRAAEGSERATSRLAA*