Scaffold Ga0068868_100139609

Overview

Basic Information

• Taxon OID: 3300005338
• Scaffold ID: Ga0068868_100139609
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1988
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015136	Metagenome / Metatranscriptome	257	Y
F016618	Metagenome / Metatranscriptome	246	Y
F043969	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068868_1001396092	F043969	GGAG	MQRLRNHFTQISILTIFAVLLGASVPSFGQARVIEVLADKDSHFKIAGMSHPEITAKAGEPLLLRISARKGKTWNRDGTVHGFTLLRAKDHSKVTGWDLELKPGTHEFSLTAPAEPGEYEVLCTVICSEEHEGMRMKFVVVP*
Ga0068868_1001396093	F015136	GAGG	MNKSMNQARVAFFFAAVALLSFYSFAKDKPKDATVSLHGAIMDSQCGFNVHSNARSHDWMTKRGIQGATDEASCTRHCVKDMGGSYVLVVKKDVYKLDDQVKAEQFAGKKVKINGSLDAETHTLHIFDMEEDK*
Ga0068868_1001396094	F016618	AGGA	MEDLSVQIENITQELKALHAQLCWSTFQDADSGDQDRILNNLLNAGLGHDLKKAVDLLSQFLWCYIESAAARINAEGVDYAQQSLRLSQVTEMLRLLHHSACPLKESLASIEQATIAVARNAEAAAMFPPLTMEKTA*