Scaffold Ga0070682_101090774

Overview

Basic Information

• Taxon OID: 3300005337
• Scaffold ID: Ga0070682_101090774
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 668
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006285	Metagenome / Metatranscriptome	377	Y
F042399	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070682_1010907741	F006285	N/A	MAKVHEYILVAVDGTCGVTKSNGPICFQQSRQEVGGHFEAYDPQLGDGYTAQVNEDGRRFKANALFDDVAGNVLIGRSHGAEMWGLSVEQRAEVLTLLKTKR*
Ga0070682_1010907742	F042399	N/A	MRTVSADRASIDYWQDYGAGRQVLKSHFGIRVWQDRCCAITNVAAETPSLFGEPHAIPVDLSTGAGQHSLSNVVSEHMNHHPESDLMAVLTGTKTFHEALG*