Scaffold Ga0068869_100002857

Overview

Basic Information

• Taxon OID: 3300005334
• Scaffold ID: Ga0068869_100002857
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10472
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025623	Metagenome	201	Y
F086318	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068869_1000028574	F025623	GGAGG	MAEQKRKSNPGFKVICISCGAKIRENASDDSYGMCLRCFYRMLAVRLRSQKRVAAGEFVSER*
Ga0068869_1000028575	F086318	GGAGG	MLPGPRGTSFSSISRAVWLGGILLLLLPIELQAGQSHSNVVCREEVSPARREQLAAKLRNITGLSQLRFDDNGFLRITFDSVATGGSQSAKQLLANAISGTNVVVIEEASNSSEVAFCRVIPGRWKEGAAGKPPVFVIQIDFADFDQVVGDDRALEAFNVGWGFLHELDHIVNDSPDALALGDSGECETHINQMRRECNLPERSEYFSTLLPMTDPAFRTRLVRIAFEEPLPTANKKKRYWVVWDANVIGGQEQNAIAALR*