Scaffold Ga0070677_10000064

Overview

Basic Information

• Taxon OID: 3300005333
• Scaffold ID: Ga0070677_10000064
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33489
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (85.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006812	Metagenome / Metatranscriptome	364	Y
F011852	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070677_1000006427	F011852	GGA	MHVSGVCVQMRMPLFSYFVVMGSTLTLGLIYISNRIEPLGSPVPTSQIVGIAKPFKPEPERSPYIITGSNFAAAYRPASARAAAEPKPTRRAASLQQQQPATDTEARRVPRWKQIAQNPIAALMSIH*
Ga0070677_1000006444	F006812	GAG	MYVLLIILLVVLPFGTAIVCGALMQWAGNTISGWSSICGLALGIYFFHKCMEVLAVT*