Scaffold Ga0066388_102450284

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_102450284
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 947
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000892	Metagenome / Metatranscriptome	846	Y
F002394	Metagenome / Metatranscriptome	564	Y
F014463	Metagenome / Metatranscriptome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1024502841	F000892	GGAGG	MTNRRRSATTRSVPAETPDRLLELTQEHIRPLIGLIDRLNDAGAEDELRVISKQLTRLS
Ga0066388_1024502842	F014463	GGAGG	MGNSYPPAAPKENPSRPARQSAVCGEDIIYVSLCSGGVIIKISAADRPKFVLGQLIIFGAIVVVALVELTLWLVN*
Ga0066388_1024502843	F002394	GGA	MSDEFDGLDAMEKAGVGATLNRCRALASKIGNELRNKRPEHFVDKLSLASVHASLER