Scaffold Ga0066388_102185578

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_102185578
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 998
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1021855781	F070583	AGGAG	MDNDNRVLVRTGARELNREETKQVSGGLTTLTACTWDPDFGRDGDGPPEC*
Ga0066388_1021855782	F011259	AGGAG	MQHEDSRVLCRKGARELTIEEVDFVSAAMAAHTNVCTAIMATATATGPGDGDGCSDTDKDAHFI*
Ga0066388_1021855783	F037883	AGGAGG	MSNQNEPGRVLNRMGARVVSEEEIERVSAGSGPPCRLTFTHLPKGGSDEDTQCP*