Scaffold Ga0066388_100699611

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066388_100699611

Scaffold Ga0066388_100699611

Overview

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_100699611 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1621
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029598	Metagenome	188	Y
F045042	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1006996112	F045042	GAG	MRLGAVVWPFAALAAVAGCVAAHTAAAPTSGTGWGYVEEPRSGTGARRVLFTMDRYVCERSRHEDVKPDFTMPPACVPLTISRGAGYWLIPALYLPTGSYIGGSTREECEAMEQRQGRNMPVPPHGFCRAASVRPAP*
Ga0066388_1006996114	F029598	AGGAG	VWRSNLVYAVLLLACSGCATQAAVSGSDVESVAKGSRVTVLVLGTGNKWASRTEPDLYMIVQAPNPTPTEKVQTDLSECQPAVRKVWNSDRTEIERTILLNEGPAYNPGARVSRSVMDLLAKTYVDCLQPKGYTVTRPEPNG*

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