Scaffold Ga0066388_100333284

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100333284
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2163
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F017074	Metagenome	243	Y
F029598	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1003332841	F017074	N/A	VIRRRPARGAVRAVAAPYNRWVIEIALAIGGLVHSLLTYFAGVRHGKRYRDEDLAAAAEHDADHRIDRVVQRYAVLVRTNQTGALHGLLVAGVKNLRSSDEIRLARERATAQTGHDPLRQYAERANLKELVDACVFDDVSVKNDREILERFGKR*
Ga0066388_1003332842	F000517	GGAG	MRTHVAVLLAAVCALVPLDGMAEEKQIADVRELAGSWQGWVTRDDGQERALLIVAADGSYRALTTDGASTEGKFYLQNGKLHYRSSRTTGTASLSDDQGKIVLTVMPENVYYKTGGAKYERVK*
Ga0066388_1003332844	F029598	GGAGG	VWRADLACAVLVLTCSGCATQAGVSFSDVESVAKGDRVTLLVLGTGNKWAPRTEPDLYMVVQTPHPTPTEKVQTDLSECQAAVRKVWNSDRTETERTILVNEGPAYNPGAQVSRAAMNLLAKTYGDCLQPKGYTANQPEPNG*