Scaffold Ga0066388_100225153

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100225153
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2506
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000788	Metagenome / Metatranscriptome	891	Y
F000966	Metagenome / Metatranscriptome	819	Y
F001070	Metagenome / Metatranscriptome	787	Y
F007784	Metagenome / Metatranscriptome	345	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1002251531	F007784	N/A	RCGAAMSKGCSVVKKLFLAGVAALSMLNVSMAADENDPPHPPRFQPWQQVWQCNDIRVTITGRDPFSVEYDLGGTIWGGAHFTVVKGQLFFNERPCLPLQPVGY*
Ga0066388_1002251535	F001070	GGAGG	MLGWFPHTATEWIELIVVAVLLWLLTVMAISELELTSVS*
Ga0066388_1002251537	F000788	AGAAG	MKPRTVYEKAVQDFTEAAQQLARLNQHFRQASFSEFEMLMGLDDEVLKRYGLPKPTVKRALLEVYQTVVLDQQSRLLQRPRDFGQGPDVEVS*
Ga0066388_1002251538	F000966	GGAGG	MVRNFAWDPDHWRFRAEEARTVADQMTHEEARTIMRRIANDYDRLAKVAEEQLAAQGKRATGD*