Scaffold Ga0066388_100045386

Overview

Basic Information

• Taxon OID: 3300005332
• Scaffold ID: Ga0066388_100045386
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4421
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014571	Metagenome / Metatranscriptome	262	Y
F048201	Metagenome / Metatranscriptome	148	Y
F102747	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1000453863	F014571	AGGA	VIVLAKLLIAISLVGLLRTSARFRSMSRELDELAFAALKRIMNATEEYGYPRELIPLLILLTALSFMLSMYVTAPGGR*
Ga0066388_1000453865	F048201	AGGAGG	MAENSGNSSSSVAAVAIVVIIVLAIFAFYFLFARGVSAHRSIDIDIKTPSHTDVPIDKR*
Ga0066388_1000453866	F102747	GAGG	MSRDVPTRRTRKAEDYAKKVRVEPAKQTRQEDPRTKRAYSRIGGQHDHGPIQKNKNRKP*