Scaffold Ga0066388

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_100005422 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0066388_100005422 Open in IMG/M

Source Dataset Name

Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8891
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8891

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Panama: Oeste

Coordinates

Lat. (^o)

9.1086

Long. (^o)

-79.8436

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F048187	Metagenome	148	Y
F065162	Metagenome / Metatranscriptome	128	Y
F096138	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1000054222	F065162	AGGAGG	MTPDDDAFKRALSEYREQTWDSTDFADLPTDVQSDIVARACRIQVADERLKELLAA*
Ga0066388_1000054224	F048187	GGGGG	MRSHLCFALALTTSLLLLACSGSMNRSPSSVANGVPLSLTIGDTPPNGVAVLFFEANVTAANLQPSDTSKPAVSVLSTPVEVEFGHLQTDTAFLSLANVTPDTYKSITLTFGNAMMTIVNHSGAAIGMCAKNAVCELTPNFDPPTATLSSAPFPITIAQKSVVGIRLDFNVDSSVQNDLSVSPTVTIKKLTQRSDSDDEQEMEQVDELDGQVTAVGSNQFTLTDKRSGQSFTVNVDSNTAFEDFDRSGCSSNPENISCLQSGQVLDVDLSMDGMGTMLAKTVEFEEKAQQVAIKGTITSVDSDTQFHMVVFNEEPTTSGIAEGSQIVVTIQPNATFQIGREDMGEDGFSNSNLSFASGADLLVGQDVQVRPGTVSSSGTTSAVNTDLVRLWPSQITGQVGKINSDNGTFTVTGLSPLFAGATPPITTINVMTLSEMDFMDFSGLGSLATGNPVSIRGLLFNTTGTPTLVTRAMRRDEGEGD*
Ga0066388_1000054226	F096138	GGGGG	MSVWENSNYCWVVICKNTKAHRETNVMFGHRIPLAETDSFEHVPVSGPFYVQCDECNQEHSYEPEEVMRVEMEIPESLTTHPRFL*
Ga0066388_1000054229	F000262	GAGG	MSSQFERVAQVCVASVTIFLVLAIVSCSGQDFAVLQPTPKDLCKCLPIEPDIADYRHLAKHVPIPNIAEQDVSVEIILTWPQDPVIPPDAPRTGRENGVFHIANAYLQSANVNAADCDVSMEISNIQDKSAPRMIVETPVDSEYCAARQNLQAQLKQRGFILDSQHGGELPQALPVDVLGMAFEDFEHNRGHVATLWELHPAILTLH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066388_100005422

Overview

Ecosystem & Geography

Associated Families

Sequences