Scaffold Ga0070670_100000023

Overview

Basic Information

• Taxon OID: 3300005331
• Scaffold ID: Ga0070670_100000023
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194438
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (77.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011242	Metagenome	293	Y
F012396	Metagenome / Metatranscriptome	281	Y
F092240	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070670_100000023114	F092240	GAGG	MTKTITILIALIIAGSTQTKAQAPVQLTIKAGTEIGESKDRFKVGDSILITLTMTNTSADPQNVCLSSNLYQNLPRLTKDGQLIPIMKWTSSVRQIAKHDATCKDINLPQKIVLDPKAQKDLDWFVLVDSNVSTGAESWYDALQPGTYELVLQRRLDCCDGSTIESNKITFTVVP*
Ga0070670_100000023146	F011242	AGGAGG	MQNNYEAPELTLIGEANEVVMGAAIGGNDFPKEFGLDFEFEQD*
Ga0070670_10000002334	F012396	AGGGGG	MDLRVGGVYCLPNGRELIVLCKRQNGSVSYRLSCRTDQYEISDDGRLICDGKLTAWDVSNLSDTGRSVGVERSATLTVTHDF*