Scaffold Ga0070690_100001027

Overview

Basic Information

• Taxon OID: 3300005330
• Scaffold ID: Ga0070690_100001027
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14276
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036911	Metagenome / Metatranscriptome	169	Y
F074082	Metagenome / Metatranscriptome	120	Y
F085977	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070690_10000102711	F085977	GGAG	VNLRTNIPASLTAFTSWLADHPVVGDSTFSRLSVRYQVARYCEYLGTNPWPSADPLRDEVARDGAVGAYADYLDTFNVPGATIATVLVSLDRFYAFLGLGPVRLRAVSRPGLHADRRR*
Ga0070690_1000010274	F074082	AGGAGG	MWFECSECGGHVNRPSAPAVCPECGVAGAIFTSADPDDLTAADSDGDSLRAIWLRAGLEQPDLVAQA*
Ga0070690_1000010277	F036911	AGGAG	MTEREDQIDKQTELRHLLRTVKTSLELAIIARAPTDLLNRLGRVAGLLDAVSQLPTDEGPAQAMIAGLIADGLSSVDAWSKWQRSHTPTA*