Basic Information | |
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Taxon OID | 3300005330 Open in IMG/M |
Scaffold ID | Ga0070690_100001027 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14276 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036911 | Metagenome / Metatranscriptome | 169 | Y |
F074082 | Metagenome / Metatranscriptome | 120 | Y |
F085977 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070690_10000102711 | F085977 | GGAG | VNLRTNIPASLTAFTSWLADHPVVGDSTFSRLSVRYQVARYCEYLGTNPWPSADPLRDEVARDGAVGAYADYLDTFNVPGATIATVLVSLDRFYAFLGLGPVRLRAVSRPGLHADRRR* |
Ga0070690_1000010274 | F074082 | AGGAGG | MWFECSECGGHVNRPSAPAVCPECGVAGAIFTSADPDDLTAADSDGDSLRAIWLRAGLEQPDLVAQA* |
Ga0070690_1000010277 | F036911 | AGGAG | MTEREDQIDKQTELRHLLRTVKTSLELAIIARAPTDLLNRLGRVAGLLDAVSQLPTDEGPAQAMIAGLIADGLSSVDAWSKWQRSHTPTA* |
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