Scaffold Ga0070658_10120409

Overview

Basic Information

• Taxon OID: 3300005327
• Scaffold ID: Ga0070658_10120409
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2181
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070658_101204091	F016064	N/A	MADLESAREAVEYRGYSLQVTYASPQWQVQIGTVLKDRPIFPPERQIVKGWNEEETLKRAKSRIDLLIESPSLH*
Ga0070658_101204092	F016418	GAGG	MSYRGYDLEQKTLMVGWQIAITKDGKFVHNGSVTKELAAAMDEAKKFVDRILAEADNAAPGAKS*
Ga0070658_101204095	F029574	GGA	MERSARYIVRLQKNGQYMVVMSRPEWANREIPGFATEAEANAWIADRRRQSRL*