Scaffold Ga0065721_10004014

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065721_10004014

Scaffold Ga0065721_10004014

Overview

Basic Information
Taxon OID	3300005286 Open in IMG/M
Scaffold ID	Ga0065721_10004014 Open in IMG/M
Source Dataset Name	Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	47155
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (76.74%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley

Source Dataset Sampling Location
Location Name	Davis, California, USA
Coordinates	Lat. (^o)	38.5402727	Long. (^o)	-121.7500776	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006324	Metagenome	376	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065721_1000401443	F006324	N/A	ADFDGDGDVGTDADIEAFFACLAGDCCATCFSGGADFDGDGDVGTDADIEAFFRVLAGGEC*

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