Scaffold Ga0065696_1320148

Overview

Basic Information

• Taxon OID: 3300005280
• Scaffold ID: Ga0065696_1320148
• Source Dataset Name: Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 532
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Amel2xC10 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil → Switchgrass Rhizosphere Bulk Soil Microbial Community From Michigan, Us

Source Dataset Sampling Location

• Location Name: East Lansing, MI
• Coordinates
  • Lat. (^o): 42.704677
  • Long. (^o): -84.468818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083871	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065696_13201481	F083871	GGAGG	MGRAHRSRPHRLGKKLQLIRIRLGLTQSELIKKLAVKDEVLYPSSISLFESGGREPSLLVLLAYSKLSGWTINELVDDKVDLSDAKIRNSKVERHSPDH*