Scaffold Ga0065716_1000188

Overview

Basic Information

• Taxon OID: 3300005277
• Scaffold ID: Ga0065716_1000188
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2670
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020599	Metagenome / Metatranscriptome	223	N
F099830	Metagenome / Metatranscriptome	103	N
F101456	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065716_10001882	F099830	N/A	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKXQEPTFLAXVTIQEKIHSVKPETPXNN*
Ga0065716_10001883	F101456	N/A	MSAKSLYAIAALGILSATSVIPIAYAKLELDPDTPHWMIPIFQRCTLAYSDTDHRHKERLVLFSEDCLLPLKYFESHGWKFLTNESEFITLEKDKD*
Ga0065716_10001884	F020599	N/A	MIYMLKRVIALITLTILAAGTVLFYNSSIAINKYAPFKTTSNDNILTPTGIGYENGLSHYFITSAGPAANQLYPTSDLVNSRAWYQVIFTTGTTAAIKEVEVDFPPGTNIADAKLVDASGLGPGTYKISGQTITYTLAPEVLVPANTELRIQYDNLLNPSIPDANLTVRIITKDSTGSTIDSGTSLAYKIRQIGTDDISNKSITREKIEPGAVVPVVNLRSSEVVSIPPQRDQSAIAACSTGEVATGGGYISNSPNVTVTFSSLGDQPRPSWVIHAVNNDTVAHNITATVICLHLSP*