Scaffold Ga0065698_100886

Overview

Basic Information

• Taxon OID: 3300005268
• Scaffold ID: Ga0065698_100886
• Source Dataset Name: Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1795
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location

• Location Name: Deep Lake Antarctica
• Coordinates
  • Lat. (^o): -68.54
  • Long. (^o): 78.18
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000607	Metagenome	992	Y
F044831	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065698_1008861	F044831	N/A	MLMANLNRQGYREIKLHVILVGAMGTIYKDHTDKPLADLNLDYDK
Ga0065698_1008862	F000607	AGG	MDKFSSKVHRVHMELGGKLLNSLRIKTQFLERLQSVSVVDGAAHTQKDDVESNGGSLENVAKVFVLFLCGVQLVLRSGVLTVLDLDEVDVTPRFAEVFRSVLSGVGGSTGGWRCC*