NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0073579_1692374

Scaffold Ga0073579_1692374


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1692374 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1798
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036709Metagenome169Y
F064199Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_16923742F064199N/AMSKKSRRRNKKILGALAAIGLGLAAKNRRNKAIDTGIQSAEDDKGSDMMEFKEQVVSTPIAKPVVKSVPVGRMRGFGTDEEELVGQRKRAEYATRIRDSQNADMMRAMRSNDAYRGMVPEVDFFSGASAKKGGRIVKTKSGGKALRGYGRAYKGKK*
Ga0073579_16923744F036709N/AMLKKLIEKLFGKRCACNVKAACDHANNVSKKVKYCLDCKLIINEN*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.