Scaffold Ga0073579_1691575

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1691575
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1919
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015097	Metagenome	257	Y
F034187	Metagenome / Metatranscriptome	175	N
F040631	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_16915751	F034187	AGG	MDGGHNALLLVNEQHITMIKVTYTNTLASIDTIEHAEIEFKLAHMGNFTEACRALAYCAGFDPDAIDSYMINPHGAAYRDE*
Ga0073579_16915754	F015097	N/A	MNYTYMLNMDNDKAESCDVVVKFTANDALEFDGFTSIVSEPPLYSDDLAYLEEWVIQGKEQWEPTGTFSHTNRERM*
Ga0073579_16915755	F040631	N/A	MNDKALTKYRQVTGACTRFIERHQNKELLEEEAQTLINDNRASRSESDWQAIKDFQDECCRTVYKCTKKGLIEPATDYVPTHPTL*