Scaffold Ga0073579_1191296

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191296
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12330
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F014834	Metagenome / Metatranscriptome	259	Y
F030052	Metagenome	186	Y
F039092	Metagenome	164	Y
F050307	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119129616	F014834	N/A	MKDTNEIEKQLKRKADAYIEQKANEMFAIHKEIADFTGTSTSFIDYITHFNSYDSAAPENKGNHTAYADAHQTKKKYRLELEMNYKQKLVAKYTKELIMKLDIFE*
Ga0073579_119129618	F007611	N/A	MKRKTITVLDYSSARVFQYSVKINVHSEEFIKFKGHRLKDVEWMEHQISNVITN*
Ga0073579_119129621	F039092	N/A	MTFTFGNIGKTYSVDSEDKVTVTHSHDSIISVGGEYFKNKHTNEWLSELEVEQAMCSRYEENESNKYY*
Ga0073579_119129623	F030052	N/A	MDNITDMNDKLQQLETLLQVHDWYYAMSDDNYYYKLGRKQFEKIWKLMDELKDGGYFTESENLYDKYSK*
Ga0073579_11912968	F050307	GAG	MSEDLKKRIKDFNKIKYPNDNSKRIIVATLKAKTVTQGSKVKE*